Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX251518: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-223201' containing sample 'Escherichia coli UMEA 3314-1'
2 ILLUMINA (Illumina HiSeq 2000) runs: 7.2M spots, 1.5G bases, 664.8Mb downloads

UUID: cfca9091-8b39-4196-978a-9d1bd1a5db22

Design: Illumina sequencing of Escherichia coli UMEA 3314-1 via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186341 • SRP019701 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli UMEA 3314-1

SAMN01885950 • SRS402348 • All experiments • All runs

Organism: Escherichia coli UMEA 3314-1

Library:

Name: Pond-223201

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 289975.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VRQB

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30324

research_project: RP-192

root_sample_id: SM-2TD5S

sample_id: SM-3VRQB

work_request: 35135

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-08 22:34:25.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 7.2M spots, 1.5G bases, 664.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR786312	3,575,142	722.2M	328.7Mb	2013-03-18
SRR786313	3,646,113	736.5M	336.1Mb	2013-03-18

ID:: 351442

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